nbp2 29542 plasmid (Addgene inc)
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nbp2 29542 plasmid
Nbp2 29542 Plasmid, supplied by Addgene inc, used in various techniques. Bioz Stars score: 91/100, based on 5 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/nbp2+29542+plasmid/pCDF1-ERBB4+(E836K)+(Plasmid+%2329542)/pm38100351-247-90-102
Average 91 stars, based on 5 article reviews
Nbp2 29542 Plasmid, supplied by Addgene inc, used in various techniques. Bioz Stars score: 91/100, based on 5 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/nbp2+29542+plasmid/pCDF1-ERBB4+(E836K)+(Plasmid+%2329542)/pm38100351-247-90-102
Average 91 stars, based on 5 article reviews
nbp2 29542 plasmid - by Bioz Stars,
2026-09
91/100 stars
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Knock-Out:Article Title: Reprogramming of tumor-associated macrophages via NEDD4-mediated CSF1R degradation by targeting USP18. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: Usp18f/f Arimoto et al.19 N/A Mouse: Isg15 knockout Osiak et al.82 N/A Oligonucleotides Primer: mouse Gapdh Forward: TATGTCGTGGAGTCTACTGG This paper N/A Primer: mouse Gapdh Reverse: GAGTTGTCATATTTCTCGTG This paper N/A Primer: mouse Usp18 Forward: CAGCCCTCATGGTCTGGTTG This paper N/A Primer: mouse Usp18 Reverse: GCACTCCGAGGCACTGTTAT This paper N/A Primer: mouse Csf1r Forward: AATGCTAACGCCACCGAGA This paper N/A Primer: mouse Csf1r Reverse: CATGGAAAGTTCGGACACAGG This paper N/A Primer: mouse Nedd4 Forward: ACCAGCGTGCAGACAAAAAC This paper N/A Primer: mouse Nedd4 Reverse: AAAAGAATGCGGTGTCGCTG This paper N/A Recombinant DNA Plasmid: pCL-10A1 Novus Cat #: NBP2-29542 Plasmid: pCL-Eco Novus Cat #: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data RNAseq data of cell lines This paper GEO: GSE226754 RNAseq data of HPV-positive OPSCCs from Johns Hopkins University cohort Guo et al.21 GEO: GSE112027 Experimental models: Cell lines Human: CAL-27 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_1107 Human: HEK293T Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_0063 Mouse: DC2.4 Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_J409 Mouse: MOC2 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_ZD33 Mouse: AT-84 Dr. Aldo Venuti (Regina Elena National Cancer Institute, Italy) N/A Experimental models: Organisms/strains Mouse: C57BL/6J The Jackson Laboratory Strain#: 000664; RRID: IMSR_JAX:000664 Mouse: C3H/HeNCrl Charles River Laboratories Strain Code: 025; RRID: IMSR_CRL:025 Oligonucleotides See Table S5 for qPCR primers This paper N/A Recombinant DNA Plasmid: pLXSN-AU1-HPV16 E5 (codonoptimized) Dr. Frank Suprynowicz (Georgetown University Medical School) N/A Plasmid: MIP (MSCV-IRES-Puro) Dr. Dong-Er Zhang (University of California, San Diego) N/A Plasmid: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER DESeq2 (v2_1.6.3) Love et al.50 N/A Gene Ontology Ashburner et al.51; Gene Ontology Consortium52; Mi et al.53 http://geneontology.org/ Reactome Fabregat et al.54 https://reactome.org/ KEGG Kanehisa et al.55–57 http://www.kegg.jp/ PEAKS Bioinformatics Solutions Inc. N/A Immune Epitope Database and Analysis Resource (IEDB) Vita et al.58 https://www.iedb.org WebLogo 3 Schneider et al.59; Crooks et al.60 https://weblogo.threeplusone.com Other MycoAlert PLUSMycoplasma Detection Kit Lonza Cat#: LT07-710 Recombinant:Article Title: Reprogramming of tumor-associated macrophages via NEDD4-mediated CSF1R degradation by targeting USP18. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: Usp18f/f Arimoto et al.19 N/A Mouse: Isg15 knockout Osiak et al.82 N/A Oligonucleotides Primer: mouse Gapdh Forward: TATGTCGTGGAGTCTACTGG This paper N/A Primer: mouse Gapdh Reverse: GAGTTGTCATATTTCTCGTG This paper N/A Primer: mouse Usp18 Forward: CAGCCCTCATGGTCTGGTTG This paper N/A Primer: mouse Usp18 Reverse: GCACTCCGAGGCACTGTTAT This paper N/A Primer: mouse Csf1r Forward: AATGCTAACGCCACCGAGA This paper N/A Primer: mouse Csf1r Reverse: CATGGAAAGTTCGGACACAGG This paper N/A Primer: mouse Nedd4 Forward: ACCAGCGTGCAGACAAAAAC This paper N/A Primer: mouse Nedd4 Reverse: AAAAGAATGCGGTGTCGCTG This paper N/A Recombinant DNA Plasmid: pCL-10A1 Novus Cat #: NBP2-29542 Plasmid: pCL-Eco Novus Cat #: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data RNAseq data of cell lines This paper GEO: GSE226754 RNAseq data of HPV-positive OPSCCs from Johns Hopkins University cohort Guo et al.21 GEO: GSE112027 Experimental models: Cell lines Human: CAL-27 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_1107 Human: HEK293T Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_0063 Mouse: DC2.4 Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_J409 Mouse: MOC2 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_ZD33 Mouse: AT-84 Dr. Aldo Venuti (Regina Elena National Cancer Institute, Italy) N/A Experimental models: Organisms/strains Mouse: C57BL/6J The Jackson Laboratory Strain#: 000664; RRID: IMSR_JAX:000664 Mouse: C3H/HeNCrl Charles River Laboratories Strain Code: 025; RRID: IMSR_CRL:025 Oligonucleotides See Table S5 for qPCR primers This paper N/A Recombinant DNA Plasmid: pLXSN-AU1-HPV16 E5 (codonoptimized) Dr. Frank Suprynowicz (Georgetown University Medical School) N/A Plasmid: MIP (MSCV-IRES-Puro) Dr. Dong-Er Zhang (University of California, San Diego) N/A Plasmid: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER DESeq2 (v2_1.6.3) Love et al.50 N/A Gene Ontology Ashburner et al.51; Gene Ontology Consortium52; Mi et al.53 http://geneontology.org/ Reactome Fabregat et al.54 https://reactome.org/ KEGG Kanehisa et al.55–57 http://www.kegg.jp/ PEAKS Bioinformatics Solutions Inc. N/A Immune Epitope Database and Analysis Resource (IEDB) Vita et al.58 https://www.iedb.org WebLogo 3 Schneider et al.59; Crooks et al.60 https://weblogo.threeplusone.com Other MycoAlert PLUSMycoplasma Detection Kit Lonza Cat#: LT07-710 Plasmid Preparation:Article Title: Reprogramming of tumor-associated macrophages via NEDD4-mediated CSF1R degradation by targeting USP18. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: Usp18f/f Arimoto et al.19 N/A Mouse: Isg15 knockout Osiak et al.82 N/A Oligonucleotides Primer: mouse Gapdh Forward: TATGTCGTGGAGTCTACTGG This paper N/A Primer: mouse Gapdh Reverse: GAGTTGTCATATTTCTCGTG This paper N/A Primer: mouse Usp18 Forward: CAGCCCTCATGGTCTGGTTG This paper N/A Primer: mouse Usp18 Reverse: GCACTCCGAGGCACTGTTAT This paper N/A Primer: mouse Csf1r Forward: AATGCTAACGCCACCGAGA This paper N/A Primer: mouse Csf1r Reverse: CATGGAAAGTTCGGACACAGG This paper N/A Primer: mouse Nedd4 Forward: ACCAGCGTGCAGACAAAAAC This paper N/A Primer: mouse Nedd4 Reverse: AAAAGAATGCGGTGTCGCTG This paper N/A Recombinant DNA Plasmid: pCL-10A1 Novus Cat #: NBP2-29542 Plasmid: pCL-Eco Novus Cat #: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data RNAseq data of cell lines This paper GEO: GSE226754 RNAseq data of HPV-positive OPSCCs from Johns Hopkins University cohort Guo et al.21 GEO: GSE112027 Experimental models: Cell lines Human: CAL-27 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_1107 Human: HEK293T Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_0063 Mouse: DC2.4 Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_J409 Mouse: MOC2 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_ZD33 Mouse: AT-84 Dr. Aldo Venuti (Regina Elena National Cancer Institute, Italy) N/A Experimental models: Organisms/strains Mouse: C57BL/6J The Jackson Laboratory Strain#: 000664; RRID: IMSR_JAX:000664 Mouse: C3H/HeNCrl Charles River Laboratories Strain Code: 025; RRID: IMSR_CRL:025 Oligonucleotides See Table S5 for qPCR primers This paper N/A Recombinant DNA Plasmid: pLXSN-AU1-HPV16 E5 (codonoptimized) Dr. Frank Suprynowicz (Georgetown University Medical School) N/A Plasmid: MIP (MSCV-IRES-Puro) Dr. Dong-Er Zhang (University of California, San Diego) N/A Plasmid: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER DESeq2 (v2_1.6.3) Love et al.50 N/A Gene Ontology Ashburner et al.51; Gene Ontology Consortium52; Mi et al.53 http://geneontology.org/ Reactome Fabregat et al.54 https://reactome.org/ KEGG Kanehisa et al.55–57 http://www.kegg.jp/ PEAKS Bioinformatics Solutions Inc. N/A Immune Epitope Database and Analysis Resource (IEDB) Vita et al.58 https://www.iedb.org WebLogo 3 Schneider et al.59; Crooks et al.60 https://weblogo.threeplusone.com Other MycoAlert PLUSMycoplasma Detection Kit Lonza Cat#: LT07-710 Expressing:Article Title: Reprogramming of tumor-associated macrophages via NEDD4-mediated CSF1R degradation by targeting USP18. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: Usp18f/f Arimoto et al.19 N/A Mouse: Isg15 knockout Osiak et al.82 N/A Oligonucleotides Primer: mouse Gapdh Forward: TATGTCGTGGAGTCTACTGG This paper N/A Primer: mouse Gapdh Reverse: GAGTTGTCATATTTCTCGTG This paper N/A Primer: mouse Usp18 Forward: CAGCCCTCATGGTCTGGTTG This paper N/A Primer: mouse Usp18 Reverse: GCACTCCGAGGCACTGTTAT This paper N/A Primer: mouse Csf1r Forward: AATGCTAACGCCACCGAGA This paper N/A Primer: mouse Csf1r Reverse: CATGGAAAGTTCGGACACAGG This paper N/A Primer: mouse Nedd4 Forward: ACCAGCGTGCAGACAAAAAC This paper N/A Primer: mouse Nedd4 Reverse: AAAAGAATGCGGTGTCGCTG This paper N/A Recombinant DNA Plasmid: pCL-10A1 Novus Cat #: NBP2-29542 Plasmid: pCL-Eco Novus Cat #: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data RNAseq data of cell lines This paper GEO: GSE226754 RNAseq data of HPV-positive OPSCCs from Johns Hopkins University cohort Guo et al.21 GEO: GSE112027 Experimental models: Cell lines Human: CAL-27 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_1107 Human: HEK293T Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_0063 Mouse: DC2.4 Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_J409 Mouse: MOC2 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_ZD33 Mouse: AT-84 Dr. Aldo Venuti (Regina Elena National Cancer Institute, Italy) N/A Experimental models: Organisms/strains Mouse: C57BL/6J The Jackson Laboratory Strain#: 000664; RRID: IMSR_JAX:000664 Mouse: C3H/HeNCrl Charles River Laboratories Strain Code: 025; RRID: IMSR_CRL:025 Oligonucleotides See Table S5 for qPCR primers This paper N/A Recombinant DNA Plasmid: pLXSN-AU1-HPV16 E5 (codonoptimized) Dr. Frank Suprynowicz (Georgetown University Medical School) N/A Plasmid: MIP (MSCV-IRES-Puro) Dr. Dong-Er Zhang (University of California, San Diego) N/A Plasmid: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER DESeq2 (v2_1.6.3) Love et al.50 N/A Gene Ontology Ashburner et al.51; Gene Ontology Consortium52; Mi et al.53 http://geneontology.org/ Reactome Fabregat et al.54 https://reactome.org/ KEGG Kanehisa et al.55–57 http://www.kegg.jp/ PEAKS Bioinformatics Solutions Inc. N/A Immune Epitope Database and Analysis Resource (IEDB) Vita et al.58 https://www.iedb.org WebLogo 3 Schneider et al.59; Crooks et al.60 https://weblogo.threeplusone.com Other MycoAlert PLUSMycoplasma Detection Kit Lonza Cat#: LT07-710 Mutagenesis:Article Title: Reprogramming of tumor-associated macrophages via NEDD4-mediated CSF1R degradation by targeting USP18. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: Usp18f/f Arimoto et al.19 N/A Mouse: Isg15 knockout Osiak et al.82 N/A Oligonucleotides Primer: mouse Gapdh Forward: TATGTCGTGGAGTCTACTGG This paper N/A Primer: mouse Gapdh Reverse: GAGTTGTCATATTTCTCGTG This paper N/A Primer: mouse Usp18 Forward: CAGCCCTCATGGTCTGGTTG This paper N/A Primer: mouse Usp18 Reverse: GCACTCCGAGGCACTGTTAT This paper N/A Primer: mouse Csf1r Forward: AATGCTAACGCCACCGAGA This paper N/A Primer: mouse Csf1r Reverse: CATGGAAAGTTCGGACACAGG This paper N/A Primer: mouse Nedd4 Forward: ACCAGCGTGCAGACAAAAAC This paper N/A Primer: mouse Nedd4 Reverse: AAAAGAATGCGGTGTCGCTG This paper N/A Recombinant DNA Plasmid: pCL-10A1 Novus Cat #: NBP2-29542 Plasmid: pCL-Eco Novus Cat #: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data RNAseq data of cell lines This paper GEO: GSE226754 RNAseq data of HPV-positive OPSCCs from Johns Hopkins University cohort Guo et al.21 GEO: GSE112027 Experimental models: Cell lines Human: CAL-27 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_1107 Human: HEK293T Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_0063 Mouse: DC2.4 Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_J409 Mouse: MOC2 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_ZD33 Mouse: AT-84 Dr. Aldo Venuti (Regina Elena National Cancer Institute, Italy) N/A Experimental models: Organisms/strains Mouse: C57BL/6J The Jackson Laboratory Strain#: 000664; RRID: IMSR_JAX:000664 Mouse: C3H/HeNCrl Charles River Laboratories Strain Code: 025; RRID: IMSR_CRL:025 Oligonucleotides See Table S5 for qPCR primers This paper N/A Recombinant DNA Plasmid: pLXSN-AU1-HPV16 E5 (codonoptimized) Dr. Frank Suprynowicz (Georgetown University Medical School) N/A Plasmid: MIP (MSCV-IRES-Puro) Dr. Dong-Er Zhang (University of California, San Diego) N/A Plasmid: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER DESeq2 (v2_1.6.3) Love et al.50 N/A Gene Ontology Ashburner et al.51; Gene Ontology Consortium52; Mi et al.53 http://geneontology.org/ Reactome Fabregat et al.54 https://reactome.org/ KEGG Kanehisa et al.55–57 http://www.kegg.jp/ PEAKS Bioinformatics Solutions Inc. N/A Immune Epitope Database and Analysis Resource (IEDB) Vita et al.58 https://www.iedb.org WebLogo 3 Schneider et al.59; Crooks et al.60 https://weblogo.threeplusone.com Other MycoAlert PLUSMycoplasma Detection Kit Lonza Cat#: LT07-710 shRNA:Article Title: Reprogramming of tumor-associated macrophages via NEDD4-mediated CSF1R degradation by targeting USP18. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: Usp18f/f Arimoto et al.19 N/A Mouse: Isg15 knockout Osiak et al.82 N/A Oligonucleotides Primer: mouse Gapdh Forward: TATGTCGTGGAGTCTACTGG This paper N/A Primer: mouse Gapdh Reverse: GAGTTGTCATATTTCTCGTG This paper N/A Primer: mouse Usp18 Forward: CAGCCCTCATGGTCTGGTTG This paper N/A Primer: mouse Usp18 Reverse: GCACTCCGAGGCACTGTTAT This paper N/A Primer: mouse Csf1r Forward: AATGCTAACGCCACCGAGA This paper N/A Primer: mouse Csf1r Reverse: CATGGAAAGTTCGGACACAGG This paper N/A Primer: mouse Nedd4 Forward: ACCAGCGTGCAGACAAAAAC This paper N/A Primer: mouse Nedd4 Reverse: AAAAGAATGCGGTGTCGCTG This paper N/A Recombinant DNA Plasmid: pCL-10A1 Novus Cat #: NBP2-29542 Plasmid: pCL-Eco Novus Cat #: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data RNAseq data of cell lines This paper GEO: GSE226754 RNAseq data of HPV-positive OPSCCs from Johns Hopkins University cohort Guo et al.21 GEO: GSE112027 Experimental models: Cell lines Human: CAL-27 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_1107 Human: HEK293T Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_0063 Mouse: DC2.4 Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_J409 Mouse: MOC2 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_ZD33 Mouse: AT-84 Dr. Aldo Venuti (Regina Elena National Cancer Institute, Italy) N/A Experimental models: Organisms/strains Mouse: C57BL/6J The Jackson Laboratory Strain#: 000664; RRID: IMSR_JAX:000664 Mouse: C3H/HeNCrl Charles River Laboratories Strain Code: 025; RRID: IMSR_CRL:025 Oligonucleotides See Table S5 for qPCR primers This paper N/A Recombinant DNA Plasmid: pLXSN-AU1-HPV16 E5 (codonoptimized) Dr. Frank Suprynowicz (Georgetown University Medical School) N/A Plasmid: MIP (MSCV-IRES-Puro) Dr. Dong-Er Zhang (University of California, San Diego) N/A Plasmid: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER DESeq2 (v2_1.6.3) Love et al.50 N/A Gene Ontology Ashburner et al.51; Gene Ontology Consortium52; Mi et al.53 http://geneontology.org/ Reactome Fabregat et al.54 https://reactome.org/ KEGG Kanehisa et al.55–57 http://www.kegg.jp/ PEAKS Bioinformatics Solutions Inc. N/A Immune Epitope Database and Analysis Resource (IEDB) Vita et al.58 https://www.iedb.org WebLogo 3 Schneider et al.59; Crooks et al.60 https://weblogo.threeplusone.com Other MycoAlert PLUSMycoplasma Detection Kit Lonza Cat#: LT07-710 Negative Control:Article Title: Reprogramming of tumor-associated macrophages via NEDD4-mediated CSF1R degradation by targeting USP18. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: Usp18f/f Arimoto et al.19 N/A Mouse: Isg15 knockout Osiak et al.82 N/A Oligonucleotides Primer: mouse Gapdh Forward: TATGTCGTGGAGTCTACTGG This paper N/A Primer: mouse Gapdh Reverse: GAGTTGTCATATTTCTCGTG This paper N/A Primer: mouse Usp18 Forward: CAGCCCTCATGGTCTGGTTG This paper N/A Primer: mouse Usp18 Reverse: GCACTCCGAGGCACTGTTAT This paper N/A Primer: mouse Csf1r Forward: AATGCTAACGCCACCGAGA This paper N/A Primer: mouse Csf1r Reverse: CATGGAAAGTTCGGACACAGG This paper N/A Primer: mouse Nedd4 Forward: ACCAGCGTGCAGACAAAAAC This paper N/A Primer: mouse Nedd4 Reverse: AAAAGAATGCGGTGTCGCTG This paper N/A Recombinant DNA Plasmid: pCL-10A1 Novus Cat #: NBP2-29542 Plasmid: pCL-Eco Novus Cat #: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data RNAseq data of cell lines This paper GEO: GSE226754 RNAseq data of HPV-positive OPSCCs from Johns Hopkins University cohort Guo et al.21 GEO: GSE112027 Experimental models: Cell lines Human: CAL-27 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_1107 Human: HEK293T Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_0063 Mouse: DC2.4 Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_J409 Mouse: MOC2 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_ZD33 Mouse: AT-84 Dr. Aldo Venuti (Regina Elena National Cancer Institute, Italy) N/A Experimental models: Organisms/strains Mouse: C57BL/6J The Jackson Laboratory Strain#: 000664; RRID: IMSR_JAX:000664 Mouse: C3H/HeNCrl Charles River Laboratories Strain Code: 025; RRID: IMSR_CRL:025 Oligonucleotides See Table S5 for qPCR primers This paper N/A Recombinant DNA Plasmid: pLXSN-AU1-HPV16 E5 (codonoptimized) Dr. Frank Suprynowicz (Georgetown University Medical School) N/A Plasmid: MIP (MSCV-IRES-Puro) Dr. Dong-Er Zhang (University of California, San Diego) N/A Plasmid: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER DESeq2 (v2_1.6.3) Love et al.50 N/A Gene Ontology Ashburner et al.51; Gene Ontology Consortium52; Mi et al.53 http://geneontology.org/ Reactome Fabregat et al.54 https://reactome.org/ KEGG Kanehisa et al.55–57 http://www.kegg.jp/ PEAKS Bioinformatics Solutions Inc. N/A Immune Epitope Database and Analysis Resource (IEDB) Vita et al.58 https://www.iedb.org WebLogo 3 Schneider et al.59; Crooks et al.60 https://weblogo.threeplusone.com Other MycoAlert PLUSMycoplasma Detection Kit Lonza Cat#: LT07-710 Real-time Polymerase Chain Reaction:Article Title: Reprogramming of tumor-associated macrophages via NEDD4-mediated CSF1R degradation by targeting USP18. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: Usp18f/f Arimoto et al.19 N/A Mouse: Isg15 knockout Osiak et al.82 N/A Oligonucleotides Primer: mouse Gapdh Forward: TATGTCGTGGAGTCTACTGG This paper N/A Primer: mouse Gapdh Reverse: GAGTTGTCATATTTCTCGTG This paper N/A Primer: mouse Usp18 Forward: CAGCCCTCATGGTCTGGTTG This paper N/A Primer: mouse Usp18 Reverse: GCACTCCGAGGCACTGTTAT This paper N/A Primer: mouse Csf1r Forward: AATGCTAACGCCACCGAGA This paper N/A Primer: mouse Csf1r Reverse: CATGGAAAGTTCGGACACAGG This paper N/A Primer: mouse Nedd4 Forward: ACCAGCGTGCAGACAAAAAC This paper N/A Primer: mouse Nedd4 Reverse: AAAAGAATGCGGTGTCGCTG This paper N/A Recombinant DNA Plasmid: pCL-10A1 Novus Cat #: NBP2-29542 Plasmid: pCL-Eco Novus Cat #: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data RNAseq data of cell lines This paper GEO: GSE226754 RNAseq data of HPV-positive OPSCCs from Johns Hopkins University cohort Guo et al.21 GEO: GSE112027 Experimental models: Cell lines Human: CAL-27 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_1107 Human: HEK293T Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_0063 Mouse: DC2.4 Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_J409 Mouse: MOC2 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_ZD33 Mouse: AT-84 Dr. Aldo Venuti (Regina Elena National Cancer Institute, Italy) N/A Experimental models: Organisms/strains Mouse: C57BL/6J The Jackson Laboratory Strain#: 000664; RRID: IMSR_JAX:000664 Mouse: C3H/HeNCrl Charles River Laboratories Strain Code: 025; RRID: IMSR_CRL:025 Oligonucleotides See Table S5 for qPCR primers This paper N/A Recombinant DNA Plasmid: pLXSN-AU1-HPV16 E5 (codonoptimized) Dr. Frank Suprynowicz (Georgetown University Medical School) N/A Plasmid: MIP (MSCV-IRES-Puro) Dr. Dong-Er Zhang (University of California, San Diego) N/A Plasmid: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER DESeq2 (v2_1.6.3) Love et al.50 N/A Gene Ontology Ashburner et al.51; Gene Ontology Consortium52; Mi et al.53 http://geneontology.org/ Reactome Fabregat et al.54 https://reactome.org/ KEGG Kanehisa et al.55–57 http://www.kegg.jp/ PEAKS Bioinformatics Solutions Inc. N/A Immune Epitope Database and Analysis Resource (IEDB) Vita et al.58 https://www.iedb.org WebLogo 3 Schneider et al.59; Crooks et al.60 https://weblogo.threeplusone.com Other MycoAlert PLUSMycoplasma Detection Kit Lonza Cat#: LT07-710 Software:Article Title: Reprogramming of tumor-associated macrophages via NEDD4-mediated CSF1R degradation by targeting USP18. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: Usp18f/f Arimoto et al.19 N/A Mouse: Isg15 knockout Osiak et al.82 N/A Oligonucleotides Primer: mouse Gapdh Forward: TATGTCGTGGAGTCTACTGG This paper N/A Primer: mouse Gapdh Reverse: GAGTTGTCATATTTCTCGTG This paper N/A Primer: mouse Usp18 Forward: CAGCCCTCATGGTCTGGTTG This paper N/A Primer: mouse Usp18 Reverse: GCACTCCGAGGCACTGTTAT This paper N/A Primer: mouse Csf1r Forward: AATGCTAACGCCACCGAGA This paper N/A Primer: mouse Csf1r Reverse: CATGGAAAGTTCGGACACAGG This paper N/A Primer: mouse Nedd4 Forward: ACCAGCGTGCAGACAAAAAC This paper N/A Primer: mouse Nedd4 Reverse: AAAAGAATGCGGTGTCGCTG This paper N/A Recombinant DNA Plasmid: pCL-10A1 Novus Cat #: NBP2-29542 Plasmid: pCL-Eco Novus Cat #: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data RNAseq data of cell lines This paper GEO: GSE226754 RNAseq data of HPV-positive OPSCCs from Johns Hopkins University cohort Guo et al.21 GEO: GSE112027 Experimental models: Cell lines Human: CAL-27 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_1107 Human: HEK293T Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_0063 Mouse: DC2.4 Dr. Dong-Er Zhang (University of California, San Diego) RRID: CVCL_J409 Mouse: MOC2 Dr. J. Silvio Gutkind (University of California, San Diego) RRID: CVCL_ZD33 Mouse: AT-84 Dr. Aldo Venuti (Regina Elena National Cancer Institute, Italy) N/A Experimental models: Organisms/strains Mouse: C57BL/6J The Jackson Laboratory Strain#: 000664; RRID: IMSR_JAX:000664 Mouse: C3H/HeNCrl Charles River Laboratories Strain Code: 025; RRID: IMSR_CRL:025 Oligonucleotides See Table S5 for qPCR primers This paper N/A Recombinant DNA Plasmid: pLXSN-AU1-HPV16 E5 (codonoptimized) Dr. Frank Suprynowicz (Georgetown University Medical School) N/A Plasmid: MIP (MSCV-IRES-Puro) Dr. Dong-Er Zhang (University of California, San Diego) N/A Plasmid: Article Title: Human papillomavirus E5 suppresses immunity via inhibition of the immunoproteasome and STING pathway. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER DESeq2 (v2_1.6.3) Love et al.50 N/A Gene Ontology Ashburner et al.51; Gene Ontology Consortium52; Mi et al.53 http://geneontology.org/ Reactome Fabregat et al.54 https://reactome.org/ KEGG Kanehisa et al.55–57 http://www.kegg.jp/ PEAKS Bioinformatics Solutions Inc. N/A Immune Epitope Database and Analysis Resource (IEDB) Vita et al.58 https://www.iedb.org WebLogo 3 Schneider et al.59; Crooks et al.60 https://weblogo.threeplusone.com Other MycoAlert PLUSMycoplasma Detection Kit Lonza Cat#: LT07-710 |